Biomedical Mathematics Seminar

Abstract TBA

(1) GCN and its Application. We introduce the GCN by reviewing the monumental paper " Semi-Supervised Classification with the Graph Convolutional Networks", ICLR 2018 by Kipf and Welling. We are going to much detail the algorithm of message aggregation and passings and learning processes. Code ; https://github.com/tkipf/gcn (2) Graph Attention networks(GAT) and its Applications. Bengio …

Simplicial Complexes, Persistent Homology and Persistent Diagrams. After a brief review on the persistent homology( Cohen-Steiner, Edelsbrunner, Harer,2010), we discuss constructive procedures persistent diagrams from the persistent homology. Code; 9 software packages generating persistent homology are introduced at " A roadmap for the computation of persistent homology", EPJ Data Science, a Springer Open Journal.

Neural Networks with the Persistent Diagrams and Graph Classification. We introduce the first paper connecting persistent diagrams to the Neural Networks by Carrier et al," A neural Network Layer for Persistent Diagrams and New Graph Topological Signatures, 2019, arXiv. We are going to analyse the End-to-End algorithm and learning processes and applications. Code; tensorflow at …

Abstract Non-invasive data collection in real-world settings with wearables provides a new opportunity for characterizing daily physiology. However, accurate and efficient characterization remains an open problem because the complex autoregressive noise of the data makes it challenging to use a simple and efficient method for inference of clock proxies, least squares method. In this talk, …

디지털 표현형의 진단 및 치료적 적용 조철현(세종충남대학교병원) 디지털 표현형(digital phenotype)은 각 개개인이 일상생활에서 사용하는 다양한 디지털 기기를 통해서 실시간으로 얻어지는 다양한 형태의 데이터를 뜻하는 것으로, 디지털 기기의 사용이 보편화되면서 의료적 적용에 대한 가능성이 한층 높아지고 있다. 디지털 표현형은 이전에는 측정(measure)하기 힘들었던 영역에 대한 측정을 가능케 함으로써, 의학적 평가나 진단적인 측면에서 임상적 함의를 갖는다고 볼 수 …

In adult tissues, stem cells undergo clonal competition because they proliferate while the stem cell niche provides limited space. This clonal competition allows the selection of healthy stem cells over time as unfit stem cells tend to lose from the competition. It could also be a mechanism to select a supercompetitor with tumorigenic mutations, which …

Abstract: Inside living cells, chemical reactions form a large web of networks. Understanding the behavior of those complex reaction networks is an important and challenging problem. In many situations, it is hard to identify the details of the reactions, such as the reaction kinetics and parameter values. It would be good if we can clarify …

Inside living cells, chemical reactions form a large web of networks. Understanding the behavior of those complex reaction networks is an important and challenging problem. In many situations, it is hard to identify the details of the reactions, such as the reaction kinetics and parameter values. It would be good if we can clarify what …

본 발표에서는 다양한 기초 생명-의학 분야에서 생성되고 있는 오믹스 자료의 연구 개발 현황에 대해서 다룰 예정이다. 보다 큰 규모로, 보다 빠르게, 보다 정확하게, 보다 정밀하게 라는 궁극적인 목표하에 이뤄지고 있는 오믹스 자료의 진화에 발맞춰, 이를 분석하는 수리통계적 모형 역시 진화하고 있다. 그 중, 이번 발표에서는 미국의 초 대형 정밀의료 프로젝트인 TopMed에서 진행하고 있는 COPD에 관한 …

Abstract: Variable selection is an approach to identifying a set of covariates that are truly important to explain the feature of a response variable. It is closely connected or belongs to model selection approaches. This talk provides a gentle introduction to Bayesian variable selection methods. The basic notion of variable selection is introduced, followed by several Bayesian approaches with a simple application example.

Abstract: TBA