Seminar

In this talk, we discuss the paper "Optimal transport for generating transition states in chemical reactions" by C. Duan et.al., Nat. Machine. Intelligence, 2025. Abstract Transition states (TSs) are transient structures that are key to understanding reaction mechanisms and designing catalysts but challenging to capture in experiments. Many optimization algorithms have been developed to search …

In this talk, we discuss the paper "scGPT: toward building a foundation model for single-cell multi-omics using generative AI" by Haotian Cui, et.al. Nature Methods, 2024. Abstract Generative pretrained models have achieved remarkable success in various domains such as language and computer vision. Specifically, the combination of large-scale diverse datasets and pretrained transformers has emerged …

In this talk, we discuss the paper "Action functional as an early warning indicator in the space of probability measures via Schrödinger bridge" by P. Zhang et.al., Quantitative biology, 2025. Abstract Critical transitions and tipping phenomena between two meta-stable states in stochastic dynamical systems are a scientific issue. In this work, we expand the methodology …