Summer Intern workshop 2024
Presentor(s) Mentor Talk title Jaehun Jeong Gyuyoung Hwang Analyzing coupled SCN cell frequencies of mammals for multi-step transcriptional model Hyunsuk Choo, Yonghee Lee Seok Joo Chae Development of a …
12 events found.
Hyukpyo Hong, Koopman representation: Linear representation – not an approximation – of nonlinear dynamics
Abstract: A system of ordinary differential equations (ODEs) is one of the most widely used tools to describe a deterministic dynamical system. In general, such ODEs involve nonlinear equations, which make analysis of dynamical systems difficult. In this talk, we introduce Koopman theory, which offers a linear representation – not an approximation – of nonlinear dynamics. In particular, we present a data-driven algorithm to find such a linear representation
Yun Min Song, RNA velocity of single cells
B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic ofIn this talk, we discuss the paper "RNA velocity of single sells" by Gioele La Manno et.al., Nature, 2018. Abstract RNA abundance is a powerful indicator of the state of …
Uncovering personalized glucose responses and circadian rhythms from multiple wearable biosensors with Bayesian dynamical modeling
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: Wearable biosensors measure physiological variables with high temporal resolution over multiple days and are increasingly employed in clinical settings, such as continuous glucose monitoring in diabetes care. Such datasets …
Gyuyoung Hwang, A universal description of stochastic oscillators
In this talk, we discuss the paper "A universal description of stochastic oscillators", by Alberto Perez-Cervera et. al., PNAS, 2023. Abstract Many systems in physics, chemistry, and biology exhibit oscillations …
Kevin Spinicci, SMSSVD : Submatrix selection singular value decomposition
In this talk, we discuss the paper, "SMSSVD : Submatrix selection singular value decomposition", by Rasmus Henningsson and Magnus Fontes, Bioinformatics, 2019. Abstract Motivation High throughput biomedical measurements normally capture …
Quantitative Ecology of Host-associated Microbiomes – Lei Dai
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: The realization that microbiomes, associated with virtually all multicellular organisms, have tremendous impact on their host health is considered as one of the most important scientific discoveries in the …
Make Your Science Friendly: A Guide to Engaging Visuals – Sunghwan Bae
B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic ofThe talk will be hybrid, participants may join via Zoom with the following link: https://us06web.zoom.us/j/99567630778?pwd=N2ZrUWtqZzJ0YURVTzlZT3JJR3FUQT09
Olive Cawiding, Predicting multiple observations in complex systems through low-dimensional embeddings
B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic ofIn this talk, we discuss the paper, "Predicting multiple observations in complex systems through low-dimensional embeddings", by Tao Wu et. al., Nature Communications, 2024. Zoom : https://us06web.zoom.us/j/99567630778?pwd=N2ZrUWtqZzJ0YURVTzlZT3JJR3FUQT09 Abstract Forecasting all components …
Hyun Kim, Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage
B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic ofIn this talk, we discuss the paper "Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage" by Zhiwei Huang, et. al., bioRxiv, …
Brenda Gavina, Achieving Occam’s razor: Deep learning for optimal model reduction
In this talk, we discuss the paper "Achieving Occam’s razor: Deep learning for optimal model reduction" by Botond B. Antal et.al., PLOS Computational Biology, 2024. Abstract All fields of science …
Novel approaches and technologies for the study of sleep and circadian rhythms in health and disease – Derk-Jan Dijk
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: The study of sleep and circadian rhythms at scale requires novel technologies and approaches that are valid, cost effective and do not pose much of a burden to the …