Circadian Interventions in Shift Workers
This talk will be given online (If you want to join, please send me an email to jaekkim@ibs.re.kr) Abstract Coupling Math with User-Centric Design Shift workers experience profound circadian disruption …
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[Big data analysis for complex biological systems, 1/3] A Bayesian Convolutional Neural Network-based Generalized Linear Model
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofAbstract: Convolutional neural networks (CNNs) provide flexible function approximations for a wide variety of applications when the input variables are in the form of images or spatial data. Although CNNs …
[Big data analysis for complex biological systems, 2/3] DCLEAR: Reconstructing Single Cell Lineage Trees from CRISPR recorders by Distance-based Methods
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofAbstract: A fundamental challenge in biology is the reconstruction of developmental trajectories as they divide and progress through different stages. The recent advance of CRISPR-based molecular tools, such as intMEMOIR …
[Big data analysis for complex biological systems, 3/3] Short presentation session
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofIn this short presentation session, six researchers from IBS BIMAG present 10-minute talks. 4:00 -- 4:10, Hyeontae Jo 4:15 -- 4:25, Hyun Kim 4:30 -- 4:40, Aurelio de los Reyes …
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofWe will discuss about "Inferring Regulatory Networks from Expression Data Using Tree-Based Methods," Huynh-Thu et al., PLoS ONE (2010). Abstract: One of the pressing open problems of computational systems biology …
Cell signaling in 2D vs. 3D
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: The activation of Ras depends upon the translocation of its guanine nucleotide exchange factor, Sos, to the plasma membrane. Moreover, artificially inducing Sos to translocate to the plasma membrane …
Hidden Markov models for monitoring circadian rhythmicity in telemetric activity data
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofWe will discuss about "Hidden Markov models for monitoring circadian rhythmicity in telemetric activity data", Huang, Qi, Journal of The Royal Society Interface 15.139 (2018): 20170885. Abstract: Wearable computing devices …
Physics-informed neural networks for PDE-constrained optimization and control
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofWe will discuss about "Physics-informed neural networks for PDE-constrained optimization and control", Barry-Straume, Jostein, et al., arXiv preprint arXiv:2205.03377 (2022). Abstract: A fundamental problem of science is designing optimal control …
STEM Initiatives for Agricultural 4.0 and Beyond
This talk will be given online. Abstract: The establishment of UN Sustainable Development Goals (SDG) has led to widespread initiative in STEM learning and research in realising these goals. Here, …
Design frameworks for engineering efficient cell factory performance within host and industrial constraints
This talk will be given online. Abstract: Synthetic biology and microbial biotechnology offer sustainable routes to the manufacture of commodity and high value chemicals from agricultural by-products instead of petrochemical …
Cell clustering for spatial transcriptomics data with graph neural networks
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofWe will discuss about "Cell clustering for spatial transcriptomics data with graph neural networks", Li, J., Chen, S., Pan, X. et al., Nat Comput Sci 2, 399–408 (2022) Abstract: Spatial transcriptomics …
Causal Inference – basics and examples
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofAbstract: In real world, people are interested in causality rather than association. For example, pharmaceutical companies want to know effectiveness of their new drugs against diseases. South Korea Government officials …