Journal Club

We will discuss about “Analytical time-dependent distributions for gene expression models with complex promoter switching mechanisms”,Jia, Chen, and Youming Li, BioRxiv (2022). Abstract Classical gene expression models assume exponential switching …

We will discuss about “Bayesian Physics Informed Neural Networks for real-world nonlinear dynamical systems”, Linka, Kevin, et al., Computer Methods in Applied Mechanics and Engineering Volume 402, 1 December 2022, 115346 …

We will discuss about “Topological Data Analysis in Time Series: Temporal Filtration and Application to Single-Cell Genomics" , Lin, Baihan., arXiv preprint arXiv:2204.14048 (2022). Abstract The absence of a conventional association …

We will discuss about “A scalable approach for solving chemical master equations based on modularization and filtering ”, Fang, Zhou, Ankit Gupta, and Mustafa Khammash., bioRxiv (2022). Abstract Solving the chemical …

We will discuss about “Optimal information networks: Application for data-driven integrated health in populations”, Servadio, Joseph L., and Matteo Convertino, Science Advances 4.2 (2018): e1701088. Abstract Development of composite indicators for …

We will discuss about “Estimating and Assessing Differential Equation Models with Time-Course Data”, Wong, Samuel WK, Shihao Yang, and S. C. Kou, arXiv preprint arXiv:2212.10653 (2022). Abstract Ordinary differential equation (ODE) …

We will discuss about “Predicting Chronic Stress among Healthy Females Using Daily-Life Physiological and Lifestyle Features from Wearable Sensors”, Magal, Noa, et al., Chronic Stress 6 (2022): 24705470221100987. Abstract Background: Chronic …

We will discuss about “Characterizing possible failure modes in physics-informed neural networks”, Krishnapriyan, Aditi, et al., Advances in Neural Information Processing Systems 34 (2021): 26548-26560. Abstract Recent work in scientific machine …

We will discuss about “Dynamical information enables inference of gene regulation at single-cell scale”, Zhang, Stephen Y., and Michael PH Stumpf., bioRxiv (2023): 2023-01. Abstract Cellular dynamics and emerging biological …

We will discuss about “Antithetic Integral Feedback Ensures Robust Perfect Adaptation in Noisy Biomolecular Networks”, Briat, Corentin, Ankit Gupta, and Mustafa Khammash. Cell systems 2.1 (2016): 15-26. Abstract The ability …

We will discuss about “Single-sample landscape entropy reveals the imminent phase transition during disease progression”, Liu R, Chen P, Chen L., Bioinformatics. 2020 Mar 1;36(5):1522-1532. Abstract Motivation: The time evolution …

We will discuss about “The effect of microRNA on protein variability and gene expression fidelity”, Hilfinger, Andreas, and Raymond Fan., Biophysical journal 122.3 (2023): 537a. Abstract Small regulatory RNA molecules such …