Livestream

Stochastic modelling of reaction-diffusion processes

ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)

This talk will be presented online. Zoom link: 997 8258 4700 (pw: 1234) Abstract: I will introduce mathematical and computational methods for spatio-temporal modelling in molecular and cell biology, including all-atom and coarse-grained molecular dynamics (MD), Brownian dynamics (BD), stochastic reaction-diffusion models and macroscopic mean-field equations. Microscopic (BD, MD) models are based on the simulation

Livestream

Multi-resolution methods for modelling intracellular processes

ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)

This talk will be presented online. Zoom link: 997 8258 4700 (pw: 1234) Abstract: I will discuss the development, analysis and applications of multi-resolution methods for spatio-temporal modelling of intracellular processes, which use (detailed) Brownian dynamics or molecular dynamics simulations in localized regions of particular interest (in which accuracy and microscopic details are important) and

KSIAM 2022 Spring Conference

IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

KSIAM 2022 Spring Conference Date May 27, 2022 (Friday) - May 29, 2022 (Sunday) Venue Daejeon, IBS Program Detailed information will be updated. The conference will be a joint meeting of the following 6 divisions: Combinatorics Data Science & Machine Learning Imaging Science Industrial Mathematics Inverse Problems Medical Mathematics  

Livestream

From live cell imaging to moment-based variational inference

ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)

This talk will be presented online. Zoom link: 997 8258 4700 (pw: 1234) Abstract: Quantitative characterization of biomolecular networks is important for the analysis and design of network functionality. Reliable models of such networks need to account for intrinsic and extrinsic noise present in the cellular environment. Stochastic kinetic models provide a principled framework for

Introduction to matrix and tensor factorization models and related stochastic nonconvex and constrained optimization algorithms

B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic of

Abstract. Matrix/tensor factorization models such as principal component analysis , nonnegative matrix factorization, and CANDECOM/PARAFAC tensor decomposition provide powerful framework for dimension reduction and interpretable feature extraction, which are important in analyzing high-dimensional data that comes in large volume. Their diverse applications include image denoising and reconstruction, dictionary learning, topic modeling, and network data analysis.

Approximating Solutions of the Chemical Master Equation using Neural Networks

B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic of

We will discuss about "Approximating Solutions of the Chemical Master Equation using Neural Networks", Sukys et al., bioRxiv, 2022 Abstract: The Chemical Master Equation (CME) provides an accurate description of stochastic biochemical reaction networks in well-mixed conditions, but it cannot be solved analytically for most systems of practical interest. While Monte Carlo methods provide a

[사전 등록 필요] 논문 글쓰기 워크샵 1/2 – 논문 작성 원리: ABC 논문 작성법 (원병묵 교수님)

Conference room, (B109) Daejeon, Daejeon, Korea, Republic of

2022년 6월 3일 오후 4시 - 5시, 성균관대 신소재공학부의 원병묵 교수님의 논문 글쓰기 워크샵 강의가 있습니다. 참가를 원하시는 분은 구글 폼(링크)에서 사전 등록을 해주시기 바랍니다. 논문은 저자와 독자 사이의 학문적 소통을 위한 논리적인 글이다. 이번 강연을 통해 논문을 작성하기 위한 기본 원리를 배울 수 있다. 특히, 연구가 거의 마무리되는 시점에 (After completing your research), 연구

[사전 등록 필요] 논문 글쓰기 워크샵 2/2 – 영어 논문 쓰기: 두려움을 성취로 바꾸는 길 (박영민 연구원님)

Conference room, (B109) Daejeon, Daejeon, Korea, Republic of

2022년 6월 3일 오후 5시 - 6시, 부산교육정책연구소 박영민 연구원님의 논문 글쓰기 워크샵 강의가 있습니다. 참가를 원하시는 분은 구글 폼(링크)에서 사전 등록을 해주시기 바랍니다. 이 ‘영어 논문 쓰기’ 워크숍은 현재의 영어 수준이나 과거의 영어 학습 경험과 상관 없이 누구나 영어 논문 쓰기를 시작할 수 있는 방법에 관한 것입니다. 우선 영어에 대한 막연한 두려움, 과거 경험으로

Phase Estimation of Nonlinear State-space Model of the Circadian Pacemaker Using Level Set Kalman Filter and Raw Wearable Data

B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic of

Abstract: Circadian rhythm is a robust internal 24 hours timekeeping mechanism maintained by the master circadian pacemaker Suprachiasmatic Nuclei (SCN). Numerous mathematical models have been proposed to capture SCN’s timekeeping mechanism and predict the circadian phase. There has been an increased demand for applying these models to the various unexplored data sets. One potential application

Dynamical System Perspective for Machine Learning

B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic of

Abstract: The connection between deep neural networks and ordinary differential equations (ODEs) is an active field of research in machine learning. In this talk, we view the hidden states of a neural network as a continuous object governed by a dynamical system. The underlying vector field is written using a dictionary representation motivated by the

Optimized persistent random walk in zebrafish airineme search process

B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic of

In addition to diffusive signals, cells in tissue also communicate via long, thin cellular protrusions, such as airinemes in zebrafish. Before establishing communication, cellular protrusions must find their target cell. In this talk, we demonstrate that the shapes of airinemes in zebrafish are consistent with a persistent random walk model. The probability of contacting the

Identifying the critical states of complex diseases by the dynamic change of multivariate distribution

B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic of

We will discuss about "Identifying the critical states of complex diseases by the dynamic change of multivariate distribution", Peng, Hao, et al., Briefings in Bioinformatics, 2022. Abstract: The dynamics of complex diseases are not always smooth; they are occasionally abrupt, i.e. there is a critical state transition or tipping point at which the disease undergoes

IBS 의생명수학그룹 Biomedical Mathematics Group
기초과학연구원 수리및계산과학연구단 의생명수학그룹
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IBS Biomedical Mathematics Group (BIMAG)
Institute for Basic Science (IBS)
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