12 events found.
Seminar
Sebastian Walcher, Reaction networks: Reduction of dimension and critical parameters
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: Typically, the mathematical description of reaction networks involves a system of parameter-dependent ordinary differential equations. Generally, one is interested in the qualitative and quantitative behavior of solutions in various …
Yun Min Song, A data-driven approach for timescale decomposition of biochemical reaction networks
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofWe will discuss about “A data-driven approach for timescale decomposition of biochemical reaction networks”, Amir Akbari, Zachary B. Haiman, Bernhard O. Palsson, bioRxiv (2023) Abstract Understanding the dynamics of biological …
Jonathan Rubin, Qualitative inverse problems: mapping from limited data to properties of dynamics and parameter values for ODE models
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofOlive Cawiding, Power spectral estimate for discrete data
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofWe will discuss about “Power spectral estimate for discrete data”, Nobert Marwan and Tobias Braun, Chaos (2023). Abstract The identification of cycles in periodic signals is a ubiquitous problem …
Tetsuya J. Kobayashi, Optimality of Biological Information Processing
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: Almost all biological systems possess the ability to gather environmental information and modulate their behaviors to adaptively respond to changing environments. While animals excel at sensing odors, even simple …
Hyeontae Jo, AutoScore:A Machine Learning–Based Automatic Clinical Score Generator and Its Application to Mortality Prediction Using Electronic Health Records
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofWe will discuss about "AutoScore:A Machine Learning–Based Automatic Clinical Score Generator and Its Application to Mortality Prediction Using Electronic Health Records", Xie, Feng, et al., JMIR medical informatics 8.10 (2020): e21798. …
Hyun Kim, Significance analysis for clustering with single-cell RNA-sequencing data
We will discuss about “Significance analysis for clustering with single-cell RNA-sequencing data”, Grabski, Isabella N., Kelly Street, and Rafael A. Irizarry., Nature Methods (2023): 1-7. Abstract Unsupervised clustering of single-cell …
Eder Zavala, Quantitative analysis of high-resolution daily profiles of HPA axis hormones
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: The Hypothalamic-Pituitary-Adrenal (HPA) axis is the key regulatory pathway responsible for maintaining homeostasis under conditions of real or perceived stress. Endocrine responses to stressors are mediated by adrenocorticotrophic hormone …
Matthew Simpson, Efficient prediction, estimation and identifiability analysis with mechanistic mathematical models
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: Interpreting data using mechanistic mathematical models provides a foundation for discovery and decision-making in all areas of science and engineering. Key steps in using mechanistic mathematical models to interpret …
Seokjoo Chae, Uncertainty quantified discovery of chemical reaction systems via Bayesian scientific machine learning
B378 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic ofWe will discuss about "Uncertainty quantified discovery of chemical reaction systems via Bayesian scientific machine learning." bioRxiv (2023): 2023-09. Abstract The recently proposed Chemical Reaction Neural Network (CRNN) discovers …
Samuel Isaacson, Spatial Particle Modeling of Immune Processes
ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)Abstract: Surface Plasmon Resonance (SPR) assays are a standard approach for quantifying kinetic parameters in antibody-antigen binding reactions. Classical SPR approaches ignore the bivalent structure of antibodies, and use simplified …