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Biomedical Mathematics Group

Biomedical Mathematics Group

기초과학연구원 의생명수학그룹

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  • December 2024

  • Mon 9

    Theoretical studies on biological oscillations by using waveform data and mathematical models – Shingo Gibo

    December 9, 2024 @ 4:00 pm - 5:00 pm KST

    Title: Theoretical studies on biological oscillations by using waveform data and mathematical models Abstract: Temporal waveforms of biological oscillations are of various shapes. In our research, we have explored the functional implications of these waveform shapes. In particular, we theoretically showed that the period of circadian clocks is proportional to the waveform distortion from sinusoidal wave. It suggests that the circadian period can be stable against temperature changes only if the waveform becomes more distorted at higher temperatures. In this talk, I will explain my past research and discuss my future plans. Reference: Shingo Gibo, Gen Kurosawa, Non-sinusoidal Waveform in Temperature Compensated Circadian Oscillations, Biophysical Journal 116 (4) 741-751 (2019). doi: 10.1016/j.bpj.2018.12.022 Shingo Gibo, Gen Kurosawa, Theoretical study on the …

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  • Wed 11

    Circadian phase in cells and humans – Achim Kramer

    December 11, 2024 @ 4:00 pm - 5:00 pm KST
    ZOOM ID: 997 8258 4700 (Biomedical Mathematics Online Colloquium) (pw: 1234)

    Abstract: Circadian clocks in cells and humans are heterogeneous in period and phase. This heterogeneity can be exploited not only to gain insight into the molecular basis of circadian rhythms, …

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  • Fri 13

    Laplacian renormalization group for heterogeneous networks – Gyuyoung Hwang

    December 13, 2024 @ 2:00 pm - 4:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    In this talk, we study and discuss the paper "Laplacian renormalization group for heterogeneous networks" by Pablo Villegas et.al, Nature Physics, 2023. Abstract  The renormalization group is the cornerstone of …

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  • Mon 16

    Solving Inverse Problems in Medical Imaging with Score-Based Generative Models – U Jin Choi

    December 16, 2024 @ 3:00 pm - 5:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    In this talk, we discuss the paper : “Solving Inverse Problems in Medical Imaging with Score-Based Generative Models” by Y Song et al. Reconstructing medical images from partial measurements is …

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  • Fri 20

    cellFlow: a generative flow-based model for single-cell count data – Hyun Kim

    December 20, 2024 @ 2:00 pm - 4:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    In this talk, we discuss the paper "cellFlow: a generative flow-based model for single-cell count data" by A. Palma et.al, ICLR, 2024. Abstract Generative modeling for single-cell RNA-seq has proven …

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  • Fri 27

    Diffusion Posterior Sampling for Linear Inverse Problem Solving- A Filtering Perspective – U Jin Choi

    December 27, 2024 @ 10:00 am - 12:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    In this talk, we discuss the paper : “Diffusion Posterior Sampling for Linear Inverse Problem Solving- A Filtering Perspective” by Z. Dou& Y. Song Diffusion models have achieved tremendous success …

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  • Mon 30

    Enhanced Gaussian Process Surrogates for Optimization and Sampling by Pure Exploration – Hwanwoo Kim

    December 30, 2024 @ 11:00 am - 12:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    Abstract: In this talk, we propose novel noise-free Bayesian optimization strategies that rely on a random exploration step to enhance the accuracy of Gaussian process surrogate models. The new algorithms …

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  • January 2025

  • Fri 3

    Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model – Seokhwan Moon

    January 3, 2025 @ 2:00 pm - 4:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    In this talk, we discuss the paper "Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model" by F. W. Townes et.al., Genome Biology, 2019. Abstract  Single-cell …

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  • Fri 10

    CARE as a wearable derived feature linking circadian amplitude to human cognitive functions – Dongju Lim

    January 10, 2025 @ 2:00 pm - 4:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    In this talk, we discuss the paper "CARE as a wearable derived feature linking circadian amplitude to human cognitive functions" by Shuya Cui et.al., npj Digital Medicine, 2023. Abstract Circadian …

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  • Tue 14

    Biomolecular Condensates: Principles and Models, Jeong-Mo Choi

    January 14, 2025 @ 11:00 am - 12:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    Over the past decade, the phase behavior of biomolecules has garnered significant attention, particularly due to its biological implications, such as the reversible formation and dissociation of biomolecular condensates. These …

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  • Fri 24

    Plausible, robust biological oscillations through allelic buffering – Eui Min Jeong

    January 24, 2025 @ 2:00 pm - 4:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    In this talk, we discuss the paper "Plausible, robust biological oscillations through allelic buffering" by F-S. Hsieh et.al, Cell Systems, 2024. at the Journal Club.  Abstract Biological oscillators can specify …

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  • Fri 31

    Self-supervised learning of accelerometer data provides new insights for sleep and its association with mortality – Yun Min Song

    January 31, 2025 @ 2:00 pm - 4:00 pm KST
    B232 Seminar Room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Daejeon, Korea, Republic of

    In this talk, we discuss the paper "Self-supervised learning of accelerometer data provides new insights for sleep and its association with mortality" by H. Yuan et.al, npj digital medicine, 2024, …

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IBS 의생명수학그룹 Biomedical Mathematics Group
기초과학연구원 수리및계산과학연구단 의생명수학그룹
대전 유성구 엑스포로 55 (우) 34126
IBS Biomedical Mathematics Group (BIMAG)
Institute for Basic Science (IBS)
55 Expo-ro Yuseong-gu Daejeon 34126 South Korea
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