Journal Club

We will discuss about “Improving gene regulatory network inference and assessment: The importance of using network structure”, Escorcia-Rodríguez, Juan M., et al., bioRxiv (2023): 2023-01. Abstract Gene regulatory networks are graph …

We will discuss about “Inference and uncertainty quantification of stochastic gene expression via synthetic models”, Öcal et al., J. R. Soc. Interface. Abstract Estimating uncertainty in model predictions is a …

We will discuss about “A multi-scale model explains oscillatory slowing and neuronal hyperactivity in Alzheimer’s disease”, Alexandersen, Christoffer G., et al., Journal of the Royal Society Interface 20.198 (2023): 20220607. Abstract …

We will discuss about “Parameter Estimation of Power Electronic Converters With Physics-Informed Machine Learning”, Zhao, Shuai, et al., IEEE Transactions on Power Electronics 37.10 (2022): 11567-11578. Abstract Physics-informed machine learning …

We will discuss about “Uncovering specific mechanisms across cell types in dynamical models”, Hauber, Adrian Lukas, Marcus Rosenblatt, and Jens Timmer., bioRxiv (2023): 2023-01. Abstract Ordinary differential equations are frequently employed …

We will discuss about “The energy cost and optimal design of networks for biological discrimination”, Yu, Qiwei, Anatoly B. Kolomeisky, and Oleg A. Igoshin., Journal of the Royal Society Interface 19.188 …

We will discuss about “Wearable data science for personalized digital medicine” Abstract Millions of people currently use wearables such as the Apple Watch to monitor their physical activity, heart rate, …

We will discuss about “scPrisma infers, filters and enhances topological signals in single-cell data using spectral template matching”, Karin, Jonathan, Yonathan Bornfeld, and Mor Nitzan., Nature Biotechnology (2023): 1-10. Abstract Single-cell …

We will discuss about “The singularity response reveals entrainment properties of the plant circadian clock”, Masuda, Kosaku, et al., Nature Communications 12.1 (2021): 864. Abstract Circadian clocks allow organisms to …

We will discuss about “ The Internal Model Principle for Biomolecular Control Theory ”, Gupta, Ankit, and Mustafa Khammash., IEEE Open Journal of Control Systems 2 (2023): 63-69.   Abstract …

We will discuss about “ Decomposing predictability to identify dominant causal drivers in complex ecosystems ”,Suzuki, Kenta, Shin-ichiro S. Matsuzaki, and Hiroshi Masuya., Proceedings of the National Academy of Sciences …

We will discuss about “Generalized Michaelis–Menten rate law with time-varying molecular concentrations”, Lim, Roktaek, et al.,bioRxiv (2022): 2022-01   Abstract The Michaelis–Menten (MM) rate law has been the dominant paradigm …