We will discuss about “The singularity response reveals entrainment properties of the plant circadian clock”, Masuda, Kosaku, et al., Nature Communications 12.1 (2021): 864. Abstract Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently …

We will discuss about “ The Internal Model Principle for Biomolecular Control Theory ”, Gupta, Ankit, and Mustafa Khammash., IEEE Open Journal of Control Systems 2 (2023): 63-69.   Abstract The well-known Internal Model Principle (IMP) is a cornerstone of modern control theory. It stipulates the necessary conditions for asymptotic robustness of disturbance-prone dynamical systems …

We will discuss about “ Decomposing predictability to identify dominant causal drivers in complex ecosystems ”,Suzuki, Kenta, Shin-ichiro S. Matsuzaki, and Hiroshi Masuya., Proceedings of the National Academy of Sciences 119.42 (2022): e2204405119.   Abstract Ecosystems are complex systems of various physical, biological, and chemical processes. Since ecosystem dynamics are composed of a mixture of …

We will discuss about “Generalized Michaelis–Menten rate law with time-varying molecular concentrations”, Lim, Roktaek, et al.,bioRxiv (2022): 2022-01   Abstract The Michaelis–Menten (MM) rate law has been the dominant paradigm of modeling biochemical rate processes for over a century with applications in biochemistry, biophysics, cell biology, and chemical engineering. The MM rate law and its …

We will discuss about “Exact solution of a three-stage model of stochastic gene expression including cell-cycle dynamics”, Wang, Yiling, et al., bioRxiv (2023): 2023-08.   Abstract The classical three-stage model of stochastic gene expression predicts the statistics of single cell mRNA and protein number fluctuations as a function of the rates of promoter switching, transcription, translation, …

We will discuss about “Antithetic proportional-integral feedback for reduced variance and improved control performance of stochastic reaction networks ”,Briat, Corentin, Ankit Gupta, and Mustafa Khammash., Journal of The Royal Society Interface 15.143 (2018): 20180079 Abstract The ability of a cell to regulate and adapt its internal state in response to unpredictable environmental changes is called …