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Biomedical Mathematics Group

Biomedical Mathematics Group

기초과학연구원 의생명수학그룹

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12 events found.

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  • January 2021

  • Thu 21
    January 21, 2021 @ 2:00 pm - 4:00 pm KST

    Seokjoo Chae, Synthetic gene networks recapitulate dynamic signal decoding and differential gene expression

    KAIST E2-1 room 3221 E2-1 building, Daejeon, Daejeon, Korea, Republic of

    We will discuss about "Synthetic gene networks recapitulate dynamic signal decoding and differential gene expression", Benzinger et al., bioRxiv (2021) Cells live in constantly changing environments and employ dynamic signaling pathways to transduce information about the signals they encounter. However, the mechanisms by which dynamic signals are decoded into appropriate gene expression patterns remain poorly …

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  • Mon 25
    January 25, 2021 @ 3:00 pm - 4:00 pm KST

    Dae Wook Kim, Development of mathematical models and theoretical frameworks to unravel mysteries of complex dynamics in biology

    KAIST E2-1 room 3221 E2-1 building, Daejeon, Daejeon, Korea, Republic of
  • Mon 25
    January 25, 2021 @ 4:00 pm - 5:00 pm KST

    Eui Min Jeong, Mathematical modeling of circadian clocks of mammal and Drosophila to reveal molecular mechanism for rhythm generation

    KAIST E2-1 room 3221 E2-1 building, Daejeon, Daejeon, Korea, Republic of
  • Fri 29
    January 29, 2021 @ 2:00 pm - 4:00 pm KST

    Yun Min Song, On the quasi-steady-state approximation in an open Michaelis-Menten reaction mechanism

    KAIST E2-1 room 3221 E2-1 building, Daejeon, Daejeon, Korea, Republic of

    We will discuss about "On the quasi-steady-state approximation in an open Michaelis-Menten reaction mechanism", bioRxiv (2021). The conditions for the validity of the standard quasi-steady-state approximation in the Michaelis--Menten mechanism in a closed reaction vessel have been well studied, but much less so the conditions for the validity of this approximation for the system with …

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  • February 2021

  • Thu 4
    February 4, 2021 @ 1:00 pm - 3:00 pm KST

    Hyukpyo Hong, Frequency Spectra and the Color of Cellular Noise

    KAIST E2-1 room 3221 E2-1 building, Daejeon, Daejeon, Korea, Republic of

    We will discuss about "Frequency Spectra and the Color of Cellular Noise",  bioRxiv (2020). The invention of the Fourier integral in the 19th century laid the foundation for modern spectral analysis methods. By decomposing a (time) signal into its essential frequency components, these methods uncovered deep insights into the signal and its generating process, precipitating …

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  • Fri 5
    February 5, 2021 @ 10:00 am - 11:00 am KST

    Jaewoo Park, Introduction to RcppArmadillo for Statistical Programming

    ZOOM ID: 709 120 4849 (ibsbimag) (pw: 1234)

    The speaker presents how to use Rcpp (Seamless R and C++ Integration) and RcppArmadillo packages ('Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library) for statistical programming.  

  • March 2021

  • Fri 5
    March 5, 2021 @ 1:00 pm - 2:00 pm KST

    Eui Min Jeong, Pairing of segmentation clock genes drives robust pattern formation

    Tea Room, IBS Daejeon, Daejeon, Korea, Republic of

    We will discuss about "Pairing of segmentation clock genes drives robust pattern formation", Zinani et al., Nature (2021) Gene expression is an inherently stochastic process; however, organismal development and homeostasis require cells to coordinate the spatiotemporal expression of large sets of genes. In metazoans, pairs of co-expressed genes often reside in the same chromosomal neighbourhood, …

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  • Fri 12
    March 12, 2021 @ 11:30 am - 1:00 pm KST

    Dae Wook Kim, Maximum Entropy Framework for Predictive Inference of Cell Population Heterogeneity and Responses in Signaling Networks

    Tea Room, IBS Daejeon, Daejeon, Korea, Republic of

    We will discuss about "Maximum Entropy Framework for Predictive Inference of Cell Population Heterogeneity and Responses in Signaling Networks", Dixit et al., Cell Systems (2020) Predictive models of signaling networks are essential for understanding cell population heterogeneity and designing rational interventions in disease. However, using computational models to predict heterogeneity of signaling dynamics is often …

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  • Fri 19
    March 19, 2021 @ 11:30 am - 1:00 pm KST

    Seokjoo Chae, Unified rational protein engineering with sequence-based deep representation learning

    Tea Room, IBS Daejeon, Daejeon, Korea, Republic of

    In this presentation, we are going to discuss the paper, "Unified rational protein engineering with sequence-based deep representation learning" Abstract Rational protein engineering requires a holistic understanding of protein function. Here, we apply deep learning to unlabeled amino-acid sequences to distill the fundamental features of a protein into a statistical representation that is semantically rich …

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  • Mon 22
    March 22, 2021 @ 10:00 am - 11:00 am KST

    Dae Wook Kim, Revealing causes of disrupted wake-sleep cycles using mathematical model (BRIC Webinar)

    Registration is required to attend this talk (link: https://www.ibric.org/seminar/#), and it will be presented in Korean. Abstract: 생체 시계 (Circadian clock)를 구성하는 핵심 단백질인 PERIOD (PER)의 양은 12시간 동안 증가했다가 12시간 동안 감소하며 24시간 주기로 변화한다. 이 24시간 주기의 PER 리듬이 우리 몸의 시계 역할을 하여 수면 시간 등 다양한 행동 및 생리 작용의 시간을 …

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  • Thu 25
    March 25, 2021 @ 11:00 am - 12:00 pm KST

    Daniel Forger, The mathematics of the wearables with applications to circadian rhythms and sleep

    ZOOM ID: 709 120 4849 (ibsbimag) (pw: 1234)

    This talk will be presented online. Zoom link: 709 120 4849 (pw: 1234) Abstract: Millions of individuals track their steps, heart rate, and other physiological signals through wearables. This data scale is unprecedented; I will describe several of our apps and ongoing studies, each of which collects wearable and mobile data from thousands of users, …

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  • April 2021

  • Thu 1
    April 1, 2021 @ 12:00 pm - 1:00 pm KST

    Yun Min Song, A stochastic oscillator model simulates the entrainment of vertebrate cellular clocks by light

    B305 Seminar room, IBS 55 Expo-ro Yuseong-gu, Daejeon, Korea, Republic of

    We will discuss about "A stochastic oscillator model simulates the entrainment of vertebrate cellular clocks by light", Kumpost et al., bioRxiv (2021) The circadian clock is a cellular mechanism that synchronizes various biological processes with respect to the time of the day. While much progress has been made characterizing the molecular mechanisms underlying this clock, …

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IBS 의생명수학그룹 Biomedical Mathematics Group
기초과학연구원 수리및계산과학연구단 의생명수학그룹
대전 유성구 엑스포로 55 (우) 34126
IBS Biomedical Mathematics Group (BIMAG)
Institute for Basic Science (IBS)
55 Expo-ro Yuseong-gu Daejeon 34126 South Korea
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