In this talk, we discuss the paper "Physics-constrained neural ordinary differential equation models to discover and predict microbial community dynamics" by J. Thompson et al., bioarxiv, 2025. Abstract Microbial communities play essential roles in shaping ecosystem functions and predictive modeling frameworks are crucial for understanding, controlling, and harnessing their properties. Competition and cross-feeding of metabolites …
Journal Club
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In this talk, we discuss the paper "Decomposing causality into its synergistic, unique, and redundant components" by Álvaro Martínez-Sánchez et al., Nature Communications, 2024. Abstract Causality lies at the heart of scientific inquiry, serving as the fundamental basis for understanding interactions among variables in physical systems. Despite its central role, current methods for causal inference … |
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In this talk, we discuss the paper "SCassist: An AI Based Workflow Assistant for Single-Cell Analysis " by Vijayaraj Nagarajan et al., bioarxiv, 2025. Abstract Single-cell RNA sequencing (scRNA-seq) data analysis often involves complex iterative workflow, requiring significant expertise and time. To navigate this complexity, we have developed SCassist, an R package that leverages the power … |
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