Journal Club

In this talk, the speaker will present introductory materials about Bayesian Machine Learning. Abstract Gaussian process(GP) is a stochastic process such that the joint distribution of an arbitrary finite subset of the random variables is a multivariate normal. It plays a fundamental role in Bayesian machine learning as it can be interpreted as a prior …

In this talk, the speaker will present introductory materials about Bayesian Machine Learning. Abstract The problem of approximating the posterior distribution (or density estimation in general) is a crucial problem in Bayesian statistics, in which intractable integrals often become the computational bottleneck. MCMC sampling is the most widely used family of algorithms for approximating posteriors. …

We will discuss about "Extending Transfer Entropy Improves Identification of Effective Connectivity in a Spiking Cortical Network Model", Ito et. al., PloS ONE, 2011 Transfer entropy (TE) is an information-theoretic measure which has received recent attention in neuroscience for its potential to identify effective connectivity between neurons. Calculating TE for large ensembles of spiking neurons is …

We will discuss about "Independent Markov Decomposition: Towards modeling kinetics of biomolecular complexes", Hempel et. al., bioRxiv, 2021 In order to advance the mission of in silico cell biology, modeling the interactions of large and complex biological systems becomes increasingly relevant. The combination of molecular dynamics (MD) and Markov state models (MSMs) have enabled the construction of …