기초과학연구원 의생명수학그룹
Abstract (국문) 최근 거대언어모델(LLM)을 기술의 발전은 AI4Science 분야에서 Foundation Model 개발에 대한 세계적인 관심을 촉발하였다. 그 중에서도 신약 및 신소재 개발에 연계된 Molecular 도메인에서의 Foundation Model 연구는 막대한 산업적 영향력과 가치를 가지고 있다. 본 발표에서는 분자 구조 생성, 물성, 및 반응 예측 문제에 적용되기 위해 필요한 Multimodal LLM 연구 성과와 방향성을 소개하고자 한다. (English) The …
In this talk, we discuss the paper "Intelligent in-cell electrophysiology: Reconstructing intracellular action potentials using a physics-informed deep learning model trained on nanoelectrode array recordings" by K. Rahmani et al., Nat. Comm, 2025. Abstract Intracellular electrophysiology is essential in neuroscience, cardiology, and pharmacology for studying cells’ electrical properties. Traditional methods like patch-clamp are precise but …
In this talk, we discuss the paper "Quantum-Inspired Approach to Analyzing Complex System Dynamics" by P. Kafashi and M. Orujlu, 2025, arxiv. Abstract We present a quantum information-inspired framework for analyzing complex systems through multivariate time series. In this approach the system's state is encoded into a density matrix, providing a compact representation of higher-order …
Biochemical reaction networks and gene regulatory networks in cells are prototypical examples of complex systems, characterized by highly nonlinear and stochastic, multilevel dynamical interactions. Gaining a deep understanding of the stochastic dynamics and thermodynamic principles governing biochemical reaction networks not only helps elucidate the intrinsic mechanisms underlying cell fate decisions and the onset and progression …
Stochastic modeling and analysis can help answer pressing medical questions. In this talk, I will attempt to justify this claim by describing recent work on two problems in medicine. The first problem concerns ovarian tissue cryopreservation, which is a proven tool to preserve ovarian follicles prior to gonadotoxic treatments. Can this procedure be applied to …
Data-driven modeling is essential for deciphering complex biological systems, yet its utility is often constrained by two fundamental hurdles: the inability to guarantee parameter identifiability and the high computational cost of learning nonlinear dynamics. This talk introduces a unified computational framework designed to overcome these challenges, bridging theoretical rigor with scalable machine learning. The first …
Oscillatory dynamics are a found everywhere in living systems, underlying processes such as metabolic regulation, cell division, and embryonic development. Identifying the mechanisms that generate these rhythms is challenging due to nonlinear interactions, multiple time scales, and limited access to all relevant variables. Data-driven approaches offer a promising route to infer dynamical models directly from …
Diffusive transport is one of the most fundamental mechanisms by which information, mass, and chemical signals propagate in physical and biological systems. In many settings—ranging from cellular signaling to chemical sensing—communication is mediated by particles undergoing random motion and interacting with small, spatially localized targets. This talk explores the mathematical structures underlying diffusive signaling, emphasizing …